Bioinformatics, genomics, tools and databases

Integration of Digital Phenotyping and Genomics for Dry Eye Disease: Protocol for a Prospective Cohort Study

Ken Nagino, Yasutsugu Akasaki, Nobuo Fuse, Soichi Ogishima, Atsushi Shimizu, Akira Uruno, Yoichi Sutoh, Yayoi Otsuka-Yamasaki, Fuji Nagami, Jun Seita, Tomohiro Nakamura, Satoshi Nagaie, Makiko Taira, Tomoko Kobayashi, Ritsuko Shimizu, Atsushi Hozawa, Shinichi Kuriyama, Atsuko Eguchi, Akie Midorikawa-Inomata, Masahiro Nakamura, Akira Murakami, Shintaro Nakao, Takenori Inomata

JMIR Res Protoc 2025 (May 12); 14:e67862

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Decentralized Biobanking Apps for Patient Tracking of Biospecimen Research: Real-World Usability and Feasibility Study

William Sanchez, Ananya Dewan, Eve Budd, M Eifler, Robert C Miller, Jeffery Kahn, Mario Macis, Marielle Gross

JMIR Bioinform Biotech 2025 (Apr 10); 6:e70463

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Investigating Associations Between Prognostic Factors in Gliomas: Unsupervised Multiple Correspondence Analysis

Maria Eduarda Goes Job, Heidge Fukumasu, Tathiane Maistro Malta, Pedro Luiz Porfirio Xavier

JMIR Bioinform Biotech 2025 (Mar 12); 6:e65645

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Use of Clinical Public Databases in Hidradenitis Suppurativa Research

Xu Liu, Linghong Guo, Xian Jiang

Interact J Med Res 2025 (Feb 18); 14:e70282

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Identifying Safeguards Disabled by Epstein-Barr Virus Infections in Genomes From Patients With Breast Cancer: Chromosomal Bioinformatics Analysis

Bernard Friedenson

JMIRx Med 2025 (Jan 29); 6:e50712

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Effect of Physical Exercise on Telomere Length: Umbrella Review and Meta-Analysis

Juan Luis Sánchez-González, Juan Luis Sánchez-Rodríguez, Rogelio González-Sarmiento, Víctor Navarro-López, Raúl Juárez-Vela, Jesús Pérez, Javier Martín-Vallejo

JMIR Aging 2025 (Jan 10); 8:e64539

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Effect of a Web-Based Heartfulness Program on the Mental Well-Being, Biomarkers, and Gene Expression Profile of Health Care Students: Randomized Controlled Trial

Jayaram Thimmapuram, Kamlesh D Patel, Deepti Bhatt, Ajay Chauhan, Divya Madhusudhan, Kashyap K Bhatt, Snehal Deshpande, Urvi Budhbhatti, Chaitanya Joshi

JMIR Bioinform Biotech 2024 (Dec 16); 5:e65506

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The Challenges and Lessons Learned Building a New UK Infrastructure for Finding and Accessing Population-Wide COVID-19 Data for Research and Public Health Analysis: The CO-CONNECT Project

Emily Jefferson, Gordon Milligan, Jenny Johnston, Shahzad Mumtaz, Christian Cole, Joseph Best, Thomas Charles Giles, Samuel Cox, Erum Masood, Scott Horban, Esmond Urwin, Jillian Beggs, Antony Chuter, Gerry Reilly, Andrew Morris, David Seymour, Susan Hopkins, Aziz Sheikh, Philip Quinlan

J Med Internet Res 2024 (Nov 20); 26:e50235

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Exploring the Intersection of Schizophrenia, Machine Learning, and Genomics: Scoping Review

Alexandre Hudon, Mélissa Beaudoin, Kingsada Phraxayavong, Stéphane Potvin, Alexandre Dumais

JMIR Bioinform Biotech 2024 (Nov 15); 5:e62752

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Methodology for Biological Sample Collection, Processing, and Storage in the Newcastle 1000 Pregnancy Cohort: Protocol for a Longitudinal, Prospective Population-Based Study in Australia

Joshua J Fisher, Tegan Grace, Nathan A Castles, Elizabeth A Jones, Sarah J Delforce, Alexandra E Peters, Gabrielle K Crombie, Emily C Hoedt, Kirby E Warren, Richard GS Kahl, Jonathan J Hirst, Kirsty G Pringle, Craig E Pennell

JMIR Res Protoc 2024 (Nov 15); 13:e63562

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Twenty-Five Years of AI in Neurology: The Journey of Predictive Medicine and Biological Breakthroughs

Barak Gutman, Amit-Haim Shmilovitch, Dvir Aran, Shahar Shelly

JMIR Neurotech 2024 (Nov 08); 3:e59556

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It Is in Our DNA: Bringing Electronic Health Records and Genomic Data Together for Precision Medicine

Alan J Robertson, Andrew J Mallett, Zornitza Stark, Clair Sullivan

JMIR Bioinform Biotech 2024 (Jun 13); 5:e55632

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Assessing Privacy Vulnerabilities in Genetic Data Sets: Scoping Review

Mara Thomas, Nuria Mackes, Asad Preuss-Dodhy, Thomas Wieland, Markus Bundschus

JMIR Bioinform Biotech 2024 (May 27); 5:e54332

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The Roles of NOTCH3 p.R544C and Thrombophilia Genes in Vietnamese Patients With Ischemic Stroke: Study Involving a Hierarchical Cluster Analysis

Huong Thi Thu Bui, Quỳnh Nguyễn Thị Phương, Ho Cam Tu, Sinh Nguyen Phuong, Thuy Thi Pham, Thu Vu, Huyen Nguyen Thi Thu, Lam Khanh Ho, Dung Nguyen Tien

JMIR Bioinform Biotech 2024 (May 07); 5:e56884

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Machine Learning Models for Prediction of Maternal Hemorrhage and Transfusion: Model Development Study

Homa Khorrami Ahmadzia, Alexa C Dzienny, Mike Bopf, Jaclyn M Phillips, Jerome Jeffrey Federspiel, Richard Amdur, Madeline Murguia Rice, Laritza Rodriguez

JMIR Bioinform Biotech 2024 (Feb 05); 5:e52059

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Treatment Discontinuation Prediction in Patients With Diabetes Using a Ranking Model: Machine Learning Model Development

Hisashi Kurasawa, Kayo Waki, Akihiro Chiba, Tomohisa Seki, Katsuyoshi Hayashi, Akinori Fujino, Tsuneyuki Haga, Takashi Noguchi, Kazuhiko Ohe

JMIR Bioinform Biotech 2022 (Sep 23); 3(1):e37951

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Reducing Crowding in Emergency Departments With Early Prediction of Hospital Admission of Adult Patients Using Biomarkers Collected at Triage: Retrospective Cohort Study

Ann Corneille Monahan, Sue S Feldman, Tony P Fitzgerald

JMIR Bioinform Biotech 2022 (Sep 13); 3(1):e38845

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The Application of Machine Learning in Predicting Mortality Risk in Patients With Severe Femoral Neck Fractures: Prediction Model Development Study

Lingxiao Xu, Jun Liu, Chunxia Han, Zisheng Ai

JMIR Bioinform Biotech 2022 (Aug 19); 3(1):e38226

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Monitoring Physical Behavior in Rehabilitation Using a Machine Learning–Based Algorithm for Thigh-Mounted Accelerometers: Development and Validation Study

Frederik Skovbjerg, Helene Honoré, Inger Mechlenburg, Matthijs Lipperts, Rikke Gade, Erhard Trillingsgaard Næss-Schmidt

JMIR Bioinform Biotech 2022 (Jul 26); 3(1):e38512

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Differential Expression of Long Noncoding RNAs in Murine Myoblasts After Short Hairpin RNA-Mediated Dysferlin Silencing In Vitro: Microarray Profiling

Richa Singhal, Rachel Lukose, Gwenyth Carr, Afsoon Moktar, Ana Lucia Gonzales-Urday, Eric C Rouchka, Bathri N Vajravelu

JMIR Bioinform Biotech 2022 (Jun 17); 3(1):e33186

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